atomicrex
0.1
An advanced atomistic model building tool
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A simple scalar degree of freedom that consists of a single value. More...
#include <DegreeOfFreedom.h>
Public Member Functions | |
ScalarDOF (const FPString &id=FPString(), double defaultValue=0, double minValue=-std::numeric_limits< double >::infinity(), double maxValue=std::numeric_limits< double >::infinity()) | |
Constructor. | |
operator double () const | |
Returns the current value of the DOF. | |
double | getValue () |
Returns the current value of the DoF. | |
ScalarDOF & | operator= (double value) |
Assigns a new value to the DOF. | |
void | setValue (double value) |
Assigns a new value to the DOF. | |
double * | getValuePointer () |
Returns a pointer to the internal storage field of this DoF. | |
void | setInitialValue (double value) |
Sets the initial value of this DOF. This also changes the current value to the same value. | |
double | initialValue () const |
Returns the initial value of this DOF. | |
virtual void | reset () override |
Resets the value of the DOF to what was given in the job file. | |
virtual int | numScalars () override |
Returns the number of scalar degrees of freedom this DOF is composed of. | |
virtual void | exportValue (double *&dst) override |
Lets the DOF export its current value(s) into the given value array. | |
virtual void | importValue (const double *&src) override |
Lets the DOF import its value(s) from the given value array. | |
virtual void | print (MsgLogger &stream) override |
Outputs the current value of the DOF. | |
double | lowerBound () const |
Returns the lower bound if this DOF has a constraint applied to it. | |
bool | hasLowerBound () const |
Returns whether this DOF has a lower bound constraint applied to it. | |
void | setLowerBound (double lowerBound) |
Sets a lower bound constraint on this DOF. | |
double | upperBound () const |
Returns the upper bound if this DOF has a constraint applied to it. | |
bool | hasUpperBound () const |
Returns whether this DOF has an upper bound constraint applied to it. | |
void | setUpperBound (double upperBound) |
Sets an upper bound constraint on this DOF. | |
virtual bool | hasBoundConstraints () const override |
Returns whether this DOF has any bound constraints applied to it. | |
virtual bool | satisfiesBoundConstraints () const override |
Returns whether this DOF satisfies the bound constraints applied to it. | |
virtual void | getBoundConstraints (std::vector< Minimizer::BoundConstraints >::iterator &types, std::vector< double >::iterator &lowerBounds, std::vector< double >::iterator &upperBounds) override |
Lets the DOF write its constraints information to the given linear arrays. | |
bool | setEqualTo (ScalarDOF *masterDOF) |
Sets this DOF to be equal to another DOF. More... | |
virtual void | parseFit (XML::Element fitElement) override |
Parse the contents of the <fit> element in the job file. | |
virtual void | parseRelax (XML::Element relaxElement) override |
Parse the contents of the <relax> element in the job file. | |
void | parseSetEqualToAttribute (XML::Element element) |
Parses the 'equalto' attribute and links the DOF to another master DOF. | |
virtual XML::OElement | generateXMLValueDefinition () const override |
Produces an XML representation of the DOF's current value. | |
virtual XML::OElement | generateXMLFitDefinition () const override |
Produces an XML representation of the DOF's fit settings. | |
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DegreeOfFreedom (const FPString &id=FPString(), const FPString &tag=FPString()) | |
Constructor. More... | |
virtual | ~DegreeOfFreedom () |
Virtual destructor. | |
const FPString & | id () const |
Return the identifier of this degree of freedom. | |
void | setId (const FPString &id) |
Sets the identifier of this degree of freedom. | |
const FPString & | tag () const |
Returns the tag on this DOF. | |
void | setTag (const FPString &tag) |
Sets the tag on this DOF. | |
bool | fitEnabled () const |
Returns whether this DOF should be varied during the fitting process. | |
void | setFitEnabled (bool enable) |
Sets whether this DOF should be varied during the fitting process. | |
bool | relax () const |
Returns whether this DOF should be relaxed during each iteration when fitting. | |
void | setRelax (bool enable) |
Sets whether this DOF is being relaxed during each iteration when fitting. | |
FitObject * | object () const |
Returns a pointer to the potential or structure to which this DOF belongs. | |
bool | resetBeforeRelax () const |
void | setResetBeforeRelax (bool enableReset) |
A simple scalar degree of freedom that consists of a single value.
bool atomicrex::ScalarDOF::setEqualTo | ( | ScalarDOF * | masterDOF | ) |
Sets this DOF to be equal to another DOF.
After calling this function the DOF will no longer be a real DOF. Every time the master DOF changes, the value of this DOF will be updated accordingly.